https://www.qradiomics.com/tags/nextflow/ Recent content in Nextflow on Qualia Radiomics Hugo en-us Sun, 17 May 2026 20:31:21 -0400 https://www.qradiomics.com/projects/2026-05-17-qradiomics/ Sun, 17 May 2026 20:31:21 -0400 https://www.qradiomics.com/projects/2026-05-17-qradiomics/ <p><strong>License:</strong> MIT · <strong>Python:</strong> 3.11+ · <strong>Repo:</strong> <a href="https://github.com/choilab-jefferson/qradiomics">choilab-jefferson/qradiomics</a></p> <p>Radiomics research CLI. <code>qr</code> does two things equally well:</p> <ul> <li><strong>Atomic tasks</strong> — convert DICOM, extract features, merge clinical, fit a model. Each is a single command, files in / files out.</li> <li><strong>Workflow assembly</strong> — generate, mutate, scaffold, and run multi-step pipelines from those atomic tasks. Default executor is <strong>Nextflow</strong> (per-patient parallel + cache + HPC); <strong>Prefect</strong> is the secondary executor; <strong>inline</strong> is the small-cohort fallback.</li> </ul> <p>The canonical radiomics data flow has four stages — <strong>data → image → features → modeling</strong> — and one <code>qr workflow plan</code> call instantiates the whole chain:</p>