qradiomics workflow overview

Introducing qradiomics — A Unified Radiomics CLI for Reproducible Research

We are releasing qradiomics — an open-source Python CLI that unifies more than a decade of Choi Lab radiomics work into a single, reproducible, pip-installable toolkit. What is qradiomics? qradiomics (command: qr) is a radiomics research CLI built for the full data flow from raw DICOM to published-grade results: DICOM download → conversion → feature extraction → clinical merge → modeling Each step is a single Unix-style command. Pipelines are assembled from those atomic commands using plain JSON plans, executed by Nextflow (per-patient parallel), Prefect, or inline. One command gets you started: ...

May 20, 2026 · 5 min · 900 words · Wookjin Choi